{"id":85,"date":"2024-09-03T13:31:27","date_gmt":"2024-09-03T13:31:27","guid":{"rendered":"https:\/\/onallab.bilkent.edu.tr\/?page_id=85"},"modified":"2025-02-28T11:08:41","modified_gmt":"2025-02-28T08:08:41","slug":"publications","status":"publish","type":"page","link":"https:\/\/onallab.bilkent.edu.tr\/?page_id=85","title":{"rendered":"Publications"},"content":{"rendered":"\n<ol class=\"wp-block-list\">\n<li>Datta, R. R., Akdogan, D., Tezcan, E. B., &amp; Onal, P. (2025). Versatile roles of disordered transcription factor effector domains in transcriptional regulation. <em>The FEBS Journal<\/em>. https:\/\/doi.org\/10.1111\/FEBS.17424<\/li>\n\n\n\n<li>Bishop, T. R.*, <strong>Onal, P.*<\/strong>, Xu, Z.*, Zheng, M., Gunasinghe, H., Nien, C.-Y., Small, S., &amp; Datta, R. R. (2023). Multi-level regulation of even-skipped stripes by the ubiquitous factor Zelda. <em>Development<\/em>, <em>150<\/em>(23). <a href=\"https:\/\/doi.org\/10.1242\/DEV.201860\">https:\/\/doi.org\/10.1242\/DEV.201860<\/a> <em>* Equal contribution<\/em><\/li>\n\n\n\n<li>Datta, R. R.*, &amp; <strong>Onal, P.*<\/strong> (2023). In Situ Hybridization as a Method to Examine Gene Regulatory Activity In Vivo. <em>Methods in Molecular Biology (Clifton, N.J.)<\/em>, <em>2599<\/em>, 241\u2013254. <a href=\"https:\/\/doi.org\/10.1007\/978-1-0716-2847-8_17\">https:\/\/doi.org\/10.1007\/978-1-0716-2847-8_17<\/a> <em>*Corresponding author<\/em><\/li>\n\n\n\n<li><strong>Onal P*,<\/strong> Imaya Gunasinghe H, Yui Umezawa K, Zheng M, Ling J, Azeez L, Dalmeus A, Tazin T, Small S (2021) Suboptimal Intermediates Underlie Evolution of the Bicoid Homeodomain. Mol Biol Evol. <a href=\"https:\/\/doi.org\/10.1093\/molbev\/msab051\">https:\/\/doi.org\/10.1093\/molbev\/msab051<\/a> *<em>Corresponding author<\/em><\/li>\n\n\n\n<li>Liu, Q.*, <strong>\u00d6nal, P.*,<\/strong> Datta, R. R.*, Rogers, J. M., Schmidt-Ott, U., Bulyk, M. L., Small S., Thornton, J. W. (2018). Ancient mechanisms for the evolution of the bicoid homeodomain\u2019s function in fly development. <em>eLife<\/em>, <em>7<\/em>. <a href=\"http:\/\/doi.org\/10.7554\/eLife.34594\">http:\/\/doi.org\/10.7554\/eLife.34594<\/a> <em>*Equal contribution<\/em><\/li>\n\n\n\n<li><strong>\u00d6nal, P<\/strong>., Gr\u00fcn, D., Adamidi, C., Rybak, A., Solana, J., Mastrobuoni, G., Wang, Y., Rahn, H. P., Chen, W., Kempa, S., Ziebold, U. and Rajewsky, N. (2012) Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells, <em>The EMBO Journal<\/em>, 2012. <a href=\"https:\/\/doi.org\/10.1038\/emboj.2012.110\">https:\/\/doi.org\/10.1038\/emboj.2012.110<\/a>.<\/li>\n\n\n\n<li>Adamidi, C., Wang, Y., Gruen, D., Mastrobuoni, G., You, X., Tolle, D., Dodt, M., Mackowiak, S. D., Gogol-Doering, A<strong>., Oenal, P.,<\/strong> Rybak, A., Ross, E., Sanchez Alvarado, A., Kempa, S., Dieterich, C., Rajewsky, N. and Chen, W. (2011) &#8216;De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics&#8217;, <em>Genome Res<\/em> 21(7): 1193-200.<\/li>\n\n\n\n<li>L\u00fcscher A., <strong>\u00d6nal<\/strong><strong> P<\/strong>., Schweingruber A. M., M\u00e4ser P. (2007) \u2018Adenosine kinase of <em>Trypanosoma brucei <\/em>and its role in susceptibility to adenosine antimetabolites\u2019 <em>J. Antimicrobial Agents &amp; Chemotherapy, <\/em>51(11):3895-901.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-85","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/85"}],"collection":[{"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=85"}],"version-history":[{"count":2,"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/85\/revisions"}],"predecessor-version":[{"id":330,"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/85\/revisions\/330"}],"wp:attachment":[{"href":"https:\/\/onallab.bilkent.edu.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=85"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}